[Incf-developers] [GSoC] Introduction as applicant for OpenWorm project "Replaying of neuroscience simulations in Geppetto"

Johannes Rieke johannes.rieke at gmail.com
Thu Mar 20 14:27:32 CET 2014


Oh yeah, thanks for the info. Public URL for my proposal:
http://www.google-melange.com/gsoc/proposal/public/google/gsoc2014/jrieke/5629499534213120

Best, Johannes


2014-03-20 7:46 GMT+01:00 Himanshu Gangal <himanshugangalcoursera at gmail.com>
:

> Hey Johannes ,
>
> I think you haven't made your proposal's visibility to public . After
> changing its settings to public , you would get the public URL to share .
>
> Himanshu
>
>
> On Thu, Mar 20, 2014 at 11:19 AM, Maria Kesa <maria.kesa at gmail.com> wrote:
>
>> Okay, I just realized that if you look at the proposal through Melange
>> Dashboard, there's a public URL that you can share.
>>
>> Cheers,
>> Maria
>>
>>
>> On Thu, Mar 20, 2014 at 7:47 AM, Maria Kesa <maria.kesa at gmail.com> wrote:
>>
>>> Johannes,
>>>
>>> The weblink for your application only works for users who are logged in
>>> as you. Maybe you could send a pdf?
>>>
>>> Cheers,
>>> Maria
>>>
>>>
>>> On Thu, Mar 20, 2014 at 7:33 AM, Johannes Rieke <
>>> johannes.rieke at gmail.com> wrote:
>>>
>>>> Hello again,
>>>>
>>>> I have just uploaded my proposal to melange (
>>>> https://www.google-melange.com/gsoc/proposal/review/student/google/gsoc2014/jrieke/5629499534213120
>>>> ).
>>>> For further project details see my last email below.
>>>>
>>>> The proposal was already reviewed by the project mentor, any further
>>>> suggestions are very welcome, particularly from outside OpenWorm as well!
>>>>
>>>> Best,
>>>> Johannes
>>>>
>>>>
>>>>> On Thu, Mar 13, 2014 at 7:17 AM, Johannes Rieke <
>>>>> johannes.rieke at gmail.com> wrote:
>>>>>
>>>>>> Hello everybody,
>>>>>>
>>>>>> I just want to introduce myself on the INCF mailing list; so far I
>>>>>> was in contact with the people at OpenWorm directly.
>>>>>>
>>>>>> I'm currently pursuing a bachelor degree in *physics *(second year).
>>>>>> So far, I have been at the University of Würzburg in Germany. In April, I
>>>>>> will enter the research-oriented and government-funded "Physics advanced"
>>>>>> program at the University of Erlangen.
>>>>>>
>>>>>> From high school on, I had a strong interest in computer science and
>>>>>> have acquired proficient knowledge in Java, Python and C/C++. During the
>>>>>> last year, I especially dealt with *simulation science, **neural
>>>>>> modeling* and mobile development through several university and
>>>>>> online courses as well as private projects.
>>>>>>
>>>>>> Since about a year, I'm following the OpenWorm project, an attempt to
>>>>>> simulate C. elegans. I'm familiar with their development, took part in
>>>>>> several of their journal clubs and contributed to the mailing list.
>>>>>> Now I am applying for their project idea "*Replaying of neuroscience
>>>>>> simulations in Geppetto"* through the INCF. This project will allow
>>>>>> to integrate results from external neural simulators (e. g. Neuron) into
>>>>>> OpenWorm's Geppetto simulation engine. I think this is particularly
>>>>>> interesting for researchers who want to implement their existing
>>>>>> neuroscience simulations into *more comprehensive models*, e. g. for
>>>>>> full-body simulations.
>>>>>> I have already discussed my ideas with the project mentor (Matteo
>>>>>> Cantarelli) and will upload a first version of my proposal at the end of
>>>>>> this week.
>>>>>>
>>>>>> Your advise and ideas as well as criticism is greatly appreciated,
>>>>>> especially from outside the OpenWorm community, too!
>>>>>>
>>>>>> *@Himanshu Gangal and everybody else applying for **"Open source,
>>>>>> cross simulator, large scale cortical models"*
>>>>>> I just had a look at some of the things you wrote here; I think there
>>>>>> might be some possibility for collaboration among our projects, as I will
>>>>>> need a few neural models in different neural simulators to test
>>>>>> transformation of the simulations' results into Geppetto's format. Some
>>>>>> questions:
>>>>>> On which and how many simulators are you going to focus?
>>>>>> Are you only going for large scale networks or will you also look at
>>>>>> some more simple models (as I will probably need these for initital testing
>>>>>> and development)?
>>>>>> Are you planning on recording and saving the simulation output?
>>>>>>
>>>>>> Best wishes to everyone for GSoc,
>>>>>>
>>>>>> Johannes Rieke
>>>>>>
>>>>>> _______________________________________________
>>>>>> incf-developers mailing list
>>>>>> incf-developers at incf.org
>>>>>> https://lists.incf.org/listinfo/incf-developers
>>>>>>
>>>>>>
>>>>>
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